How to construct a network with subnetwork

Hi,

I have a transcription factor gene interaction network. And genes are grouped into subgroups/subnetworks. How can I create such a network? I have a .sif file for TF-gene network, and I have files, groups in an Excell table (every column a group).

Thanks in advance!

Hi,

sorry for the delayed reply.

One way of doing this is:

1) first create a .sif file with TF-Group#N, where Group#N are your groups of genes.
2) Open your .sif file
3) On the network by mouse right clicking chose Create Meta Nodes,
that runs "Create Meta Node Wizard" where you can specify your files for every MetaNode/group.

Let us know if you have problems with this.
Thanks.

Hello!